Logiciels & Plateformes

Software: AgroPortal - A vocabulary and ontology repository for agronomy and related domains

http://agroportal.lirmm.fr

https://github.com/agroportal

Software: Understanding, Comparing and Discovering Keys of Different Semantics in Knowledge Bases

https://github.com/danaiS/BECKEY

bliss

package R: Bayesian functional Linear regression with Sparse Step functions (BLiSS)

A method for the Bayesian Functional Linear Regression model (functions-on-scalar), including two estimators of the coefficient function and an estimator of its support. A representation of the posterior distribution is also available.

https://pmgrollemund.github.io/bliss/
https://github.com/pmgrollemund/bliss
https://cran.r-project.org/web/packages/bliss/index.html

Software: Action Depollution - a serious game to learn how to decontaminate a lake in closed loop, developed with Inria, Funkadelichik and sponsorised by CapMaths.

https://depoll-game.inria.fr/

DrBats

package R: Feed longitudinal data into a Bayesian Latent Factor Model to obtain a low-rank representation. Parameters are estimated using a Hamiltonian Monte Carlo algorithm with STAN.

https://cran.r-project.org/web/packages/DrBats/
https://forgemia.inra.fr/benedicte.fontez/drbats

geozoning

package R: a zoning method for spatial data

https://github.com/hazaeljones/geozoning

software: An individual-based model for the degradation of one cellulose bead (dozens of micrometers in diameter) by cellulolytic bacteria. Developed in 2013 in the context of the ANR Syscom project DISCO and the RNCS MnMs .

http://www-sop.inria.fr/members/Fabien.Campillo/software/ibm-cellulose/

Software: Conception et optimisation de systèmes d'inférence floue
https://www.fispro.org/fr/

Software: Traitement de données spatialisées pour l'aide à la décision
https://www.geofis.org/fr/

Software: An Individual-based model simulator for clonal plant growth developed in 2011 and 2012 in the context of the ANR Syscom project Modecol, in Matlab.
http://www-sop.inria.fr/members/Fabien.Campillo/software/ibm-clonal/

kfino

Package R: Kalman filter with impulse noised outliers (kfino) is a robust sequential algorithm allowing to filter data with a large number of outliers. This algorithm is based on simple latent linear Gaussian processes as in the Kalman Filter method and is devoted to detect impulse-noised outliers. These are data points that differ significantly from other observations.
https://forgemia.inra.fr/isabelle.sanchez/kfino
https://CRAN.R-project.org/package=kfino

The OpenSILEX open source software allows building information systems to manage experimental data.
http://www.opensilex.org/
In an open science approach, OpenSILEX is ontology-driven and implements the FAIR principles for Easy to Find, Accessible, Interoperable and Reusable data.
Its architecture allows to manage large volumes of complex heterogeneous data.
    * Ontology-driven architecture
    * Fair data
    * Modular architecture
    * BrAPI compatibility
    * Adaptability
OpenSILEX is derived in several implementations corresponding to specific scientific communities:
    * PHIS (high throughput plant phenotyping),
    * Sixtine (experimental plant units at INRAE),
    * SunAgri (agrophotovoltaic),
    * Silex-VitiOeno (wine and viticulture),
    * Alfis (alcoholic fermentation data)
    * ENVIBIS (depollution).

Software: SOFA Logiciel de simulation des fermentations alcooliques développé conjointement avec l'UMR Sciences pour l'Oenologie (SPO), commercialisé par Intelli'Oeno

https://www.intellioeno.com/web/SOFA

SpiceFP

Package R: Sparse and Structured Procedure to Identify Combined Effects of Functional Predictors

https://github.com/giraultg/SpiceFP
https://cran.r-project.org/web/packages/SpiceFP/index.html

Software: Mining Conditional Keys on Knowledge Bases

https://github.com/lgalarra/vickey

VITELBIO: a web-service for the simulation and analysis of networks of interconnected chemostats, developed within the VITELBIO project.

http://vitelbio.itkweb.fr/vitelbio/